4CFE Structure of full length human AMPK in complex with a small molecule activator, a benzimidazole derivative (991) date
authors Xiao, B., Sanders, M.J., Carmena, D., Bright, N.J., Haire, L.F., Underwood, E., Patel, B.R., Heath, R.B., Walker, P.A., Hallen, S., Giordanetto, F., Martin, S.R., Carling, D., Gamblin, S.J.
compound source
symmetry
R_factor
R_Free 0.2529
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.02
ligand 992, AMP, SEP, STU, TPO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • histone serine kinase activi...


    • D, B


    F, E
  • cAMP-dependent protein kinas...


    • Primary referenceStructural basis of AMPK regulation by small molecule activators., Xiao B, Sanders MJ, Carmena D, Bright NJ, Haire LF, Underwood E, Patel BR, Heath RB, Walker PA, Hallen S, Giordanetto F, Martin SR, Carling D, Gamblin SJ, Nat Commun. 2013 Dec 19;4:3017. doi: 10.1038/ncomms4017. PMID:24352254
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (619 Kb) [Save to disk]
  • Biological Unit Coordinates (4cfe.pdb1.gz) 301 Kb
  • Biological Unit Coordinates (4cfe.pdb2.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 4CFE
  • CSU: Contacts of Structural Units for 4CFE
  • Structure Factors (547 Kb)
  • Retrieve 4CFE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CFE from S2C, [Save to disk]
  • Re-refined 4cfe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CFE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CFE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CFE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cfe] [4cfe_C] [4cfe_D] [4cfe_E] [4cfe_A] [4cfe_B] [4cfe_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CFE: [AMPKBI] [CBS] [S_TKc ] by SMART
    • Other resources with information on 4CFE
  • Community annotation for 4CFE at PDBWiki (http://pdbwiki.org)

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