4CGY Crystal structure of the human topoisomerase III alpha-RMI1 complex date
authors Bocquet, N., Bunker, R.D., Thoma, N.H.
compound source
symmetry
R_factor
R_Free 0.2310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and mechanistic insight into Holliday-junction dissolution by Topoisomerase IIIalpha and RMI1., Bocquet N, Bizard AH, Abdulrahman W, Larsen NB, Faty M, Cavadini S, Bunker RD, Kowalczykowski SC, Cejka P, Hickson ID, Thoma NH, Nat Struct Mol Biol. 2014 Feb 9. doi: 10.1038/nsmb.2775. PMID:24509834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4cgy.pdb1.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 4CGY
  • CSU: Contacts of Structural Units for 4CGY
  • Structure Factors (2569 Kb)
  • Retrieve 4CGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CGY from S2C, [Save to disk]
  • Re-refined 4cgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CGY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cgy_B] [4cgy] [4cgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CGY: [DUF1767] [TOP1Ac] [TOP1Bc] [TOPRIM ] by SMART
  • Other resources with information on 4CGY
  • Community annotation for 4CGY at PDBWiki (http://pdbwiki.org)

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