4CI1 Structure of the DDB1-CRBN E3 ubiquitin ligase bound to thalidomide date
authors Fischer, E.S., Boehm, K., Thoma, N.H.
compound source
symmetry
R_factor
R_Free 0.2332
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.98
ligand CAF, EF2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of the DDB1-CRBN E3 ubiquitin ligase in complex with thalidomide., Fischer ES, Bohm K, Lydeard JR, Yang H, Stadler MB, Cavadini S, Nagel J, Serluca F, Acker V, Lingaraju GM, Tichkule RB, Schebesta M, Forrester WC, Schirle M, Hassiepen U, Ottl J, Hild M, Beckwith RE, Harper JW, Jenkins JL, Thoma NH, Nature. 2014 Jul 16. doi: 10.1038/nature13527. PMID:25043012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (497 Kb) [Save to disk]
  • Biological Unit Coordinates (4ci1.pdb1.gz) 490 Kb
  • LPC: Ligand-Protein Contacts for 4CI1
  • CSU: Contacts of Structural Units for 4CI1
  • Structure Factors (435 Kb)
  • Retrieve 4CI1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CI1 from S2C, [Save to disk]
  • Re-refined 4ci1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CI1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CI1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CI1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ci1_B] [4ci1_A] [4ci1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CI1: [LON ] by SMART
  • Other resources with information on 4CI1
  • Community annotation for 4CI1 at PDBWiki (http://pdbwiki.org)

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