4CLV Crystal Structure of dodecylphosphocholine-solubilized NccX from Cupriavidus metallidurans 31A date
authors Legrand, P., Girard, E., Petit-Hartlein, I., Maillard, A.P., Coves, J.
compound source
symmetry
R_factor
R_Free 0.2642
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.12
ligand PC, PO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe X-ray structure of NccX from Cupriavidus metallidurans 31A illustrates potential dangers of detergent solubilization when generating and interpreting crystal structures of membrane proteins., Ziani W, Maillard AP, Petit-Hartlein I, Garnier N, Crouzy S, Girard E, Coves J, J Biol Chem. 2014 Sep 25. pii: jbc.M114.586537. PMID:25258316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4clv.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 4CLV
  • CSU: Contacts of Structural Units for 4CLV
  • Structure Factors (203 Kb)
  • Retrieve 4CLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CLV from S2C, [Save to disk]
  • Re-refined 4clv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CLV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CLV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4clv_B] [4clv] [4clv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CLV
  • Community annotation for 4CLV at PDBWiki (http://pdbwiki.org)

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