4CMP Crystal structure of S. pyogenes Cas9 date
authors Jinek, M., Jiang, F., Taylor, D.W., Sternberg, S.H., Kaya, E., Ma, E., Anders, C., Hauer, M., Zhou, K., Lin, S., Kaplan, M., Iavarone, A.T., Charpentier, E., Nogales, E., Doudna, J.A.
compound source
symmetry
R_factor
R_Free 0.2858
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.62
ligand MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceStructures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation., Jinek M, Jiang F, Taylor DW, Sternberg SH, Kaya E, Ma E, Anders C, Hauer M, Zhou K, Lin S, Kaplan M, Iavarone AT, Charpentier E, Nogales E, Doudna JA, Science. 2014 Feb 6. PMID:24505130
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1193 Kb) [Save to disk]
  • Biological Unit Coordinates (4cmp.pdb1.gz) 586 Kb
  • Biological Unit Coordinates (4cmp.pdb2.gz) 604 Kb
  • LPC: Ligand-Protein Contacts for 4CMP
  • CSU: Contacts of Structural Units for 4CMP
  • Structure Factors (812 Kb)
  • Retrieve 4CMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CMP from S2C, [Save to disk]
  • Re-refined 4cmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CMP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CMP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cmp_B] [4cmp] [4cmp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CMP: [HNHc ] by SMART
    • Other resources with information on 4CMP
  • Community annotation for 4CMP at PDBWiki (http://pdbwiki.org)

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