4CNC Crystal structure of human 5T4 (Wnt-activated inhibitory factor 1, Trophoblast glycoprotein) date
authors Zhao, Y., Malinauskas, T., Harlos, K., Jones, E.Y.
compound source
symmetry
R_factor
R_Free 0.21727
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand GOL, NA, NAG, PEG, SO4 enzyme
Primary referenceStructural Insights into the Inhibition of Wnt Signaling by Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1., Zhao Y, Malinauskas T, Harlos K, Jones EY, Structure. 2014 Feb 25. pii: S0969-2126(14)00037-9. doi:, 10.1016/j.str.2014.01.009. PMID:24582434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (4cnc.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (4cnc.pdb2.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 4CNC
  • CSU: Contacts of Structural Units for 4CNC
  • Structure Factors (1118 Kb)
  • Retrieve 4CNC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CNC from S2C, [Save to disk]
  • Re-refined 4cnc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CNC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CNC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CNC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cnc_B] [4cnc_A] [4cnc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CNC: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 4CNC
  • Community annotation for 4CNC at PDBWiki (http://pdbwiki.org)

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