4CNM Crystal structure of human 5T4 (Wnt-activated inhibitory factor 1, Trophoblast glycoprotein) date
authors Zhao, Y., Malinauskas, T., Harlos, K., Jones, E.Y.
compound source
symmetry
R_factor
R_Free 0.22153
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand CIT, NAG, PEG enzyme
Primary referenceStructural Insights into the Inhibition of Wnt Signaling by Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1., Zhao Y, Malinauskas T, Harlos K, Jones EY, Structure. 2014 Feb 25. pii: S0969-2126(14)00037-9. doi:, 10.1016/j.str.2014.01.009. PMID:24582434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (4cnm.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4CNM
  • CSU: Contacts of Structural Units for 4CNM
  • Structure Factors (610 Kb)
  • Retrieve 4CNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CNM from S2C, [Save to disk]
  • Re-refined 4cnm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CNM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cnm] [4cnm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CNM: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART
    • Other resources with information on 4CNM
  • Community annotation for 4CNM at PDBWiki (http://pdbwiki.org)

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