4D07 DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5a tail date
authors Bodor, A., Radnai, L., Hetenyi, C., Rapali, P., Lang, A., Kover, K.E., Perczel, A., Wahlgren, W.Y., Katona, G., Nyitray, L.
compound source
symmetry
R_factor
R_Free 0.23300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand CO, SO4, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDYNLL2 dynein light chain binds to an extended linear motif of myosin 5a tail that has structural plasticity., Bodor A, Radnai L, Hetenyi C, Rapali P, Lang A, Kover KE, Perczel A, Wahlgren WY, Katona G, Nyitray L, Biochemistry. 2014 Oct 13. PMID:25312846
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (4d07.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4D07
  • CSU: Contacts of Structural Units for 4D07
  • Structure Factors (213 Kb)
  • Retrieve 4D07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D07 from S2C, [Save to disk]
  • Re-refined 4d07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4D07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4D07
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D07, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d07_B] [4d07_A] [4d07]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4D07: [Dynein_light ] by SMART
  • Other resources with information on 4D07
  • Community annotation for 4D07 at PDBWiki (http://pdbwiki.org)

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