4D0N AKAP13 (AKAP-Lbc) RhoGEF domain in complex with RhoA date
authors Azeez, K.R.Abdul., Shrestha, L., Krojer, T., Allerston, C., Delft, F.von., Bountra, C., Arrowsmith, C., Edwards, A.M., Knapp, S., Klussmann, E., Elkins, J.M.
compound source
symmetry
R_factor
R_Free 0.23946
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EDO, GDP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceThe Crystal Structure of the RhoA : AKAP-Lbc DH-PH Domain Complex., Abdul Azeez KR, Knapp S, Fernandes JM, Klussmann E, Elkins JM, Biochem J. 2014 Sep 4. PMID:25186459
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4d0n.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 4D0N
  • CSU: Contacts of Structural Units for 4D0N
  • Structure Factors (2566 Kb)
  • Retrieve 4D0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D0N from S2C, [Save to disk]
  • Re-refined 4d0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4D0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4D0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D0N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d0n_B] [4d0n_A] [4d0n]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D0N: [PH] [RHO] [RhoGEF ] by SMART
  • Other resources with information on 4D0N
  • Community annotation for 4D0N at PDBWiki (http://pdbwiki.org)

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