4D0O AKAP13 (AKAP-Lbc) DH domain date
authors Azeez, K.R.Abdul., Shrestha, L., Krojer, T., Allerston, C., Delft, F.von., Bountra, C., Arrowsmith, C., Edwards, A.M., Knapp, S., Klussmann, E., Elkins, J.M.
compound source
symmetry
R_factor
R_Free 0.30849
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Crystal Structure of the RhoA : AKAP-Lbc DH-PH Domain Complex., Abdul Azeez KR, Knapp S, Fernandes JM, Klussmann E, Elkins JM, Biochem J. 2014 Sep 4. PMID:25186459
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4d0o.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (4d0o.pdb2.gz) 78 Kb
  • CSU: Contacts of Structural Units for 4D0O
  • Structure Factors (769 Kb)
  • Retrieve 4D0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D0O from S2C, [Save to disk]
  • Re-refined 4d0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D0O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D0O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d0o_A] [4d0o_B] [4d0o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4D0O: [RhoGEF ] by SMART
    • Other resources with information on 4D0O
  • Community annotation for 4D0O at PDBWiki (http://pdbwiki.org)

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