4D1B STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER, IN A CLOSED CONFORMATION WITH BENZYL-HYDANTOIN date
authors Brueckner, F., Geng, T., Weyand, S., Drew, D., Iwata, S., Henderson, P.J.F., Cameron, A.D.
compound source
symmetry
R_factor
R_Free 0.3081
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand 5FH, NA enzyme
note 4D1B supersedes 2JLO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular mechanism of ligand recognition by membrane transport protein, Mhp1., Simmons KJ, Jackson SM, Brueckner F, Patching SG, Beckstein O, Ivanova E, Geng T, Weyand S, Drew D, Lanigan J, Sharples DJ, Sansom MS, Iwata S, Fishwick CW, Johnson AP, Cameron AD, Henderson PJ, EMBO J. 2014 Jun 21. pii: e201387557. PMID:24952894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4d1b.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4D1B
  • CSU: Contacts of Structural Units for 4D1B
  • Structure Factors (629 Kb)
  • Retrieve 4D1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D1B from S2C, [Save to disk]
  • Re-refined 4d1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D1B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D1B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d1b_A] [4d1b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4D1B
  • Community annotation for 4D1B at PDBWiki (http://pdbwiki.org)

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