4D86 Human PARP14 (ARTD8, BAL2) - macro domains 1 and 2 in complex with adenosine-5-diphosphate date 2012-01-10
authors Karlberg, T., Thorsell, A.G., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Ekblad, T., Weigelt, J., Schuler, H., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.23816
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ADP enzyme
Primary referenceRecognition of Mono-ADP-Ribosylated ARTD10 Substrates by ARTD8 Macrodomains., Forst AH, Karlberg T, Herzog N, Thorsell AG, Gross A, Feijs KL, Verheugd P, Kursula P, Nijmeijer B, Kremmer E, Kleine H, Ladurner AG, Schuler H, Luscher B, Structure. 2013 Mar 5;21(3):462-75. doi: 10.1016/j.str.2012.12.019. PMID:23473667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4d86.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4D86
  • CSU: Contacts of Structural Units for 4D86
  • Structure Factors (206 Kb)
  • Retrieve 4D86 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D86 from S2C, [Save to disk]
  • Re-refined 4d86 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D86 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D86
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D86, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d86_A] [4d86]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4D86: [A1pp ] by SMART
    • Other resources with information on 4D86
  • Community annotation for 4D86 at PDBWiki (http://pdbwiki.org)

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