4D9R Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D date
authors Murray, J.M., Wiesmann, C.
compound source
symmetry
R_factor
R_Free 0.2512
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.42
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibiting alternative pathway complement activation by targeting the exosite of factor D., Katschke KJ, Wu P, Ganesan R, Kelley RF, Mathieu MA, Hass PE, Murray J, Kirchhofer D, Wiesmann C, van Lookeren Campagne M, J Biol Chem. 2012 Feb 23. PMID:22362762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (4d9r.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (4d9r.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4D9R
  • CSU: Contacts of Structural Units for 4D9R
  • Structure Factors (933 Kb)
  • Retrieve 4D9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D9R from S2C, [Save to disk]
  • Re-refined 4d9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D9R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D9R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D9R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d9r_A] [4d9r_E] [4d9r_B] [4d9r_H] [4d9r] [4d9r_D] [4d9r_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D9R: [IG_like] [IGv] [Tryp_SPc ] by SMART
    • Other resources with information on 4D9R
  • Community annotation for 4D9R at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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