4DBG Crystal structure of HOIL-1L-UBL complexed with a HOIP-UBA derivative date 2012-01-15
authors Yagi, H., Hiromoto, T., Mizushima, T., Kurimoto, E., Kato, K.
compound source
symmetry
R_factor
R_Free 0.2525
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.71
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceA non-canonical UBA-UBL interaction forms the linear-ubiquitin-chain assembly complex., Yagi H, Ishimoto K, Hiromoto T, Fujita H, Mizushima T, Uekusa Y, Yagi-Utsumi M, Kurimoto E, Noda M, Uchiyama S, Tokunaga F, Iwai K, Kato K, EMBO Rep. 2012 Mar 20. doi: 10.1038/embor.2012.24. PMID:22430200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4dbg.pdb1.gz) 78 Kb
  • CSU: Contacts of Structural Units for 4DBG
  • Structure Factors (367 Kb)
  • Retrieve 4DBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DBG from S2C, [Save to disk]
  • Re-refined 4dbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DBG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DBG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dbg] [4dbg_B] [4dbg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DBG
  • Community annotation for 4DBG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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