4DBL Crystal structure of E159Q mutant of BtuCDF date
authors Korkhov, V.M., Mireku, S.M., Hvorup, R.N., Locher, K.P.
compound source
symmetry
R_factor
R_Free 0.2513
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.49
ligand PO4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, B, G
  • transmembrane transporter ac...
  • vitamin transmembrane transp...


  • H, C, D, I
  • ATPase activity, coupled to ...


  • J, E


    Primary referenceAsymmetric states of vitamin B12 transporter BtuCD are not discriminated by its cognate substrate binding protein BtuF., Korkhov VM, Mireku SA, Hvorup RN, Locher KP, FEBS Lett. 2012 Apr 5;586(7):972-6. Epub 2012 Mar 8. PMID:22569249
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (913 Kb) [Save to disk]
  • Biological Unit Coordinates (4dbl.pdb1.gz) 453 Kb
  • Biological Unit Coordinates (4dbl.pdb2.gz) 457 Kb
  • LPC: Ligand-Protein Contacts for 4DBL
  • CSU: Contacts of Structural Units for 4DBL
  • Structure Factors (938 Kb)
  • Retrieve 4DBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DBL from S2C, [Save to disk]
  • Re-refined 4dbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dbl_G] [4dbl_C] [4dbl_E] [4dbl_F] [4dbl_B] [4dbl_H] [4dbl_J] [4dbl_D] [4dbl] [4dbl_A] [4dbl_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DBL: [AAA ] by SMART
  • Other resources with information on 4DBL
  • Community annotation for 4DBL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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