4DBW Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 (AKR1C3) in complex with NADP+ and 2'-desmethyl-indomethacin date
authors Chen, M., Christianson, D.W., Marnett, L.J., Penning, T.M.
compound source
symmetry
R_factor
R_Free 0.2346
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 511, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • NADP-retinol dehydrogenase a...


    • Primary referenceDevelopment of potent and selective indomethacin analogues for the inhibition of AKR1C3 (Type 5 17beta-hydroxysteroid dehydrogenase/prostaglandin F synthase) in castrate-resistant prostate cancer., Liedtke AJ, Adeniji AO, Chen M, Byrns MC, Jin Y, Christianson DW, Marnett LJ, Penning TM, J Med Chem. 2013 Mar 28;56(6):2429-46. doi: 10.1021/jm3017656. Epub 2013 Mar 13. PMID:23432095
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4dbw.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (4dbw.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 4DBW
  • CSU: Contacts of Structural Units for 4DBW
  • Structure Factors (723 Kb)
  • Retrieve 4DBW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DBW from S2C, [Save to disk]
  • Re-refined 4dbw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DBW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DBW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DBW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dbw_B] [4dbw] [4dbw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DBW
  • Community annotation for 4DBW at PDBWiki (http://pdbwiki.org)

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