4DGP The wild-type Src homology 2 (SH2)-domain containing protein tyrosine phosphatase-2 (SHP2) date 2012-01-26
authors Yu, Z.H., Xu, J., Walls, C.D., Chen, L., Zhang, S., Wu, L., Wang, L.N., Liu, S.J., Zhang, Z.Y.
compound source
symmetry
R_factor
R_Free 0.2548
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Mechanistic Insights into LEOPARD Syndrome-Associated SHP2 Mutations., Yu ZH, Wu J, Walls CD, Chen L, Zhang S, Zhang R, Wu L, Wang L, Liu S, Zhang ZY, J Biol Chem. 2013 Mar 1. PMID:23457302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4dgp.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 4DGP
  • Structure Factors (132 Kb)
  • Retrieve 4DGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DGP from S2C, [Save to disk]
  • Re-refined 4dgp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DGP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DGP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dgp_A] [4dgp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DGP: [PTPc] [SH2 ] by SMART
    • Other resources with information on 4DGP
  • Community annotation for 4DGP at PDBWiki (http://pdbwiki.org)

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