4DHF Structure of Aurora A mutant bound to Biogenidec cpd 15 date 2012-01-27
authors Silvian, L., Marcotte, D.J.
compound source
symmetry
R_factor
R_Free 0.29874
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 0K6, MG, PO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design of 2,6,7-trisubstituted-7H-pyrrolo[2,3-d]pyrimidines as Aurora kinases inhibitors., Le Brazidec JY, Pasis A, Tam B, Boykin C, Wang D, Marcotte DJ, Claassen G, Chong JH, Chao J, Fan J, Nguyen K, Silvian L, Ling L, Zhang L, Choi M, Teng M, Pathan N, Zhao S, Li T, Taveras A, Bioorg Med Chem Lett. 2012 Jun 15;22(12):4033-7. Epub 2012 Apr 25. PMID:22607669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (4dhf.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4dhf.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4DHF
  • CSU: Contacts of Structural Units for 4DHF
  • Structure Factors (224 Kb)
  • Retrieve 4DHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DHF from S2C, [Save to disk]
  • Re-refined 4dhf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DHF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DHF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dhf_A] [4dhf] [4dhf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DHF: [S_TKc ] by SMART
    • Other resources with information on 4DHF
  • Community annotation for 4DHF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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