4DI2	Crystal structure of BACE1 in complex with hydroxyethylamine inhibitor 37	date	2012-01-30
authors	Whittington, D.A., Long, A.M.
compound		source
symmetry		R_factor R_Free 0.22948
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.00
ligand	0K9, GOL	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Design and Synthesis of Potent, Orally Efficacious Hydroxyethylamine Derived beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE1) Inhibitors., Dineen TA, Weiss MM, Williamson T, Acton P, Babu-Khan S, Bartberger MD, Brown J, Chen K, Cheng Y, Citron M, Croghan MD, Dunn RT 2nd, Esmay J, Graceffa RF, Harried SS, Hickman D, Hitchcock SA, Horne DB, Huang H, Imbeah-Ampiah R, Judd T, Kaller MR, Kreiman CR, La DS, Li V, Lopez P, Louie S, Monenschein H, Nguyen TT, Pennington LD, San Miguel T, Sickmier EA, Vargas HM, Wahl RC, Wen PH, Whittington DA, Wood S, Xue Q, Yang BH, Patel VF, Zhong W, J Med Chem. 2012 Apr 18. PMID:22468684

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk] Biological Unit Coordinates (4di2.pdb1.gz) 70 Kb Biological Unit Coordinates (4di2.pdb2.gz) 70 Kb Biological Unit Coordinates (4di2.pdb3.gz) 69 Kb LPC: Ligand-Protein Contacts for 4DI2 CSU: Contacts of Structural Units for 4DI2 Structure Factors (2652 Kb) Retrieve 4DI2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DI2 from S2C, [Save to disk] Re-refined 4di2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DI2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DI2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DI2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4di2_C] [4di2_B] [4di2_A] [4di2] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4DI2

Community annotation for 4DI2 at PDBWiki (http://pdbwiki.org)

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