4DJI Structure of glutamate-GABA antiporter GadC date 2012-02-02
authors Ma, D., Lu, P.L., Yan, C.Y., Fan, C., Yin, P., Wang, J.W., Shi, Y.G.
compound source
symmetry
R_factor
R_Free 0.3277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.19
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and mechanism of a glutamate-GABA antiporter., Ma D, Lu P, Yan C, Fan C, Yin P, Wang J, Shi Y, Nature. 2012 Mar 11;483(7391):632-6. doi: 10.1038/nature10917. PMID:22407317
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (314 Kb) [Save to disk]
  • Biological Unit Coordinates (4dji.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (4dji.pdb2.gz) 153 Kb
  • Biological Unit Coordinates (4dji.pdb3.gz) 308 Kb
  • CSU: Contacts of Structural Units for 4DJI
  • Structure Factors (300 Kb)
  • Retrieve 4DJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJI from S2C, [Save to disk]
  • Re-refined 4dji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DJI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dji_A] [4dji] [4dji_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DJI
  • Community annotation for 4DJI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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