4DK5	Crystal structure of human PI3K-gamma in complex with a pyridyl-triazine inhibitor	date	2012-02-03
authors	Whittington, D.A., Tang, J., Yakowec, P.
compound		source
symmetry		R_factor R_Free 0.2891
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.95
ligand	0KO, SO4 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-Based Design of a Novel Series of Potent, Selective Inhibitors of the Class I Phosphatidylinositol 3-Kinases., Smith AL, D'Angelo ND, Bo YY, Booker SK, Cee VJ, Herberich B, Hong FT, Jackson CL, Lanman BA, Liu L, Nishimura N, Pettus LH, Reed AB, Tadesse S, Tamayo NA, Wurz RP, Yang K, Andrews KL, Whittington DA, McCarter JD, San Miguel T, Zalameda L, Jiang J, Subramanian R, Mullady EL, Caenepeel S, Freeman DJ, Wang L, Zhang N, Wu T, Hughes PE, Norman MH, J Med Chem. 2012 May 1. PMID:22548365

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk] Biological Unit Coordinates (4dk5.pdb1.gz) 284 Kb LPC: Ligand-Protein Contacts for 4DK5 CSU: Contacts of Structural Units for 4DK5 Structure Factors (499 Kb) Retrieve 4DK5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DK5 from S2C, [Save to disk] Re-refined 4dk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DK5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DK5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DK5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dk5] [4dk5_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4DK5: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART

Other resources with information on 4DK5

Community annotation for 4DK5 at PDBWiki (http://pdbwiki.org)

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