4DLO Crystal structure of the GAIN and HormR domains of brain angiogenesis inhibitor 3 (BAI3) date 2012-02-06
authors Arac, D., Boucard, A.A., Bolliger, M.F., Nguyen, J., Soltis, M., Sudhof, T.C., Brunger, A.T.
compound source
symmetry
R_factor
R_Free 0.2281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand FUL, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA novel evolutionarily conserved domain of cell-adhesion GPCRs mediates autoproteolysis., Arac D, Boucard AA, Bolliger MF, Nguyen J, Soltis SM, Sudhof TC, Brunger AT, EMBO J. 2012 Feb 14;31(6):1364-78. doi: 10.1038/emboj.2012.26. PMID:22333914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (4dlo.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (4dlo.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4DLO
  • CSU: Contacts of Structural Units for 4DLO
  • Structure Factors (1307 Kb)
  • Retrieve 4DLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DLO from S2C, [Save to disk]
  • Re-refined 4dlo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DLO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DLO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dlo] [4dlo_B] [4dlo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DLO: [GPS] [HormR ] by SMART
    • Other resources with information on 4DLO
  • Community annotation for 4DLO at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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