4DM3 Crystal structure of human PNMT in complex adohcy, resorcinol and imidazole date
authors Nair, P.C., Malde, A.K., Mark, A.E.
compound source
symmetry
R_factor
R_Free 0.2752
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand IMD, RCO, SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMissing fragments: detecting cooperative binding in fragment-based drug design., Nair PC, Malde AK, Drinkwater N, Mark AE, ACS Med Chem Lett. 2012 Feb 14;3(4):322-6. doi: 10.1021/ml300015u. eCollection, 2012 Apr 12. PMID:24900472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4dm3.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4DM3
  • CSU: Contacts of Structural Units for 4DM3
  • Structure Factors (231 Kb)
  • Retrieve 4DM3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DM3 from S2C, [Save to disk]
  • Re-refined 4dm3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DM3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DM3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DM3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dm3_A] [4dm3] [4dm3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DM3
  • Community annotation for 4DM3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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