4DM6 Crystal structure of RARb LBD homodimer in complex with TTNPB date 2012-02-07
authors Osz, J., Brelivet, Y., Peluso-Iltis, C., Cura, V., Eiler, S., Ruff, M., Bourguet, W., Rochel, N., Moras, D.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand TTB BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E


Primary referenceStructural basis for a molecular allosteric control mechanism of cofactor binding to nuclear receptors., Osz J, Brelivet Y, Peluso-Iltis C, Cura V, Eiler S, Ruff M, Bourguet W, Rochel N, Moras D, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):E588-94. Epub 2012 Feb 21. PMID:22355136
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4dm6.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4dm6.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4DM6
  • CSU: Contacts of Structural Units for 4DM6
  • Structure Factors (373 Kb)
  • Retrieve 4DM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DM6 from S2C, [Save to disk]
  • Re-refined 4dm6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DM6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DM6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dm6] [4dm6_B] [4dm6_F] [4dm6_E] [4dm6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DM6: [HOLI ] by SMART
  • Other resources with information on 4DM6
  • Community annotation for 4DM6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science