4DNB METHYLATION OF THE ECORI RECOGNITION SITE DOES NOT ALTER DNA CONFORMATION. THE CRYSTAL STRUCTURE OF D(CGCGAM6ATTCGCG) AT 2.0 ANGSTROMS RESOLUTION date
authors Frederick, C.A., Quigley, G.J., Marel, G.A.Van.Der., Boom, J.H.Van., Wang, A.H.J., Rich, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 6MA enzyme
Primary referenceMethylation of the EcoRI recognition site does not alter DNA conformation: the crystal structure of d(CGCGAm6ATTCGCG) at 2.0-A resolution., Frederick CA, Quigley GJ, van der Marel GA, van Boom JH, Wang AH, Rich A, J Biol Chem 1988 Nov 25;263(33):17872-9. PMID:2846582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (4dnb.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 4DNB
  • CSU: Contacts of Structural Units for 4DNB
  • Likely Quarternary Molecular Structure file(s) for 4DNB
  • Retrieve 4DNB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DNB from S2C, [Save to disk]
  • View 4DNB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DNB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DNB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dnb] [4dnb_A] [4dnb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DNB
  • Community annotation for 4DNB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science