4DPI	BACE-1 in complex with HEA-macrocyclic inhibitor, MV078512	date	2012-02-13
authors	Lindberg, J., Borkakoti, N., Derbyshire, D.
compound		source
symmetry		R_factor R_Free 0.2194
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.90
ligand	0N1	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Highly potent macrocyclic BACE-1 inhibitors incorporating a hydroxyethylamine core: Design, synthesis and X-ray crystal structures of enzyme inhibitor complexes., Sandgren V, Agback T, Johansson PO, Lindberg J, Kvarnstrom I, Samuelsson B, Belda O, Dahlgren A, Bioorg Med Chem. 2012 Jul 15;20(14):4377-89. Epub 2012 May 24. PMID:22698785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (4dpi.pdb1.gz) 129 Kb LPC: Ligand-Protein Contacts for 4DPI CSU: Contacts of Structural Units for 4DPI Structure Factors (459 Kb) Retrieve 4DPI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DPI from S2C, [Save to disk] Re-refined 4dpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DPI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DPI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DPI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dpi_A] [4dpi] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4DPI

Community annotation for 4DPI at PDBWiki (http://pdbwiki.org)

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