4DQ6 Transferase date Feb 15, 2012
title Crystal Structure Of Plp-Bound Putative Aminotransferase Fro Clostridium Difficile 630
authors I.G.Shabalin, O.Onopriyenko, M.Kudritska, M.Chruszcz, S.Grimshaw P.J.Porebski, D.R.Cooper, A.Savchenko, W.F.Anderson, W.Minor, Ce Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Putative Pyridoxal Phosphate-Dependent Transferas
Chain: A, B
Engineered: Yes
 Organism_scientific: Clostridium Difficile
Organism_taxid: 272563
Strain: 630
Gene: Cd2733, Cd630_27330
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.153 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.426 56.094 85.275 90.00 99.33 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, PLP enzyme
Gene CD630
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (276 Kb) [Save to disk]
  • Biological Unit Coordinates (4dq6.pdb1.gz) 270 Kb
  • LPC: Ligand-Protein Contacts for 4DQ6
  • CSU: Contacts of Structural Units for 4DQ6
  • Structure Factors (1710 Kb)
  • Retrieve 4DQ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DQ6 from S2C, [Save to disk]
  • Re-refined 4dq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DQ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DQ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DQ6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dq6] [4dq6_B] [4dq6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DQ6
  • Community annotation for 4DQ6 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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