4DRJ o-crystal structure of the PPIase domain of FKBP52, Rapamycin and the FRB fragment of mTOR date 2012-02-17
authors Maerz, A.M., Bracher, A., Hausch, F.
compound source
symmetry
R_factor
R_Free 0.2247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand RAP, SO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceLarge FK506-binding Proteins Shape the Pharmacology of Rapamycin., Marz AM, Fabian AK, Kozany C, Bracher A, Hausch F, Mol Cell Biol. 2013 Jan 28. PMID:23358420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4drj.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 4DRJ
  • CSU: Contacts of Structural Units for 4DRJ
  • Structure Factors (334 Kb)
  • Retrieve 4DRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRJ from S2C, [Save to disk]
  • Re-refined 4drj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DRJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DRJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drj_B] [4drj_A] [4drj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DRJ: [Rapamycin_bind ] by SMART
  • Other resources with information on 4DRJ
  • Community annotation for 4DRJ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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