4DRP Evaluation of Synthetic FK506 Analogs as Ligands for the FK506-Binding Proteins 51 and 52: Complex of FKBP51 with 2-(3-((R)-3-(3,4-dimethoxyphenyl)-1-((S)-1-(2-((1R,2S)-2-ethyl-1-hydroxy-cyclohexyl)-2-oxoacetyl)piperidine-2-carbonyloxy)propyl)phenoxy)acetic acid from cocrystallization date 2012-02-17
authors Gopalakrishnan, R., Kozany, C., Gaali, S., Kress, C., Hoogeland, B., Bracher, A., Hausch, F.
compound source
symmetry
R_factor
R_Free 0.2609
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 0MD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEvaluation of Synthetic FK506 Analogues as Ligands for the FK506-Binding Proteins 51 and 52., Gopalakrishnan R, Kozany C, Gaali S, Kress C, Hoogeland B, Bracher A, Hausch F, J Med Chem. 2012 May 10;55(9):4114-22. Epub 2012 Apr 19. PMID:22455444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4drp.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4DRP
  • CSU: Contacts of Structural Units for 4DRP
  • Structure Factors (215 Kb)
  • Retrieve 4DRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRP from S2C, [Save to disk]
  • Re-refined 4drp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DRP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DRP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drp] [4drp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DRP
  • Community annotation for 4DRP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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