4DXA Co-crystal structure of Rap1 in complex with KRIT1 date 2012-02-27
authors Li, X., Zhang, R., Boggon, T.J.
compound source
symmetry
R_factor
R_Free 0.2388
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand GSP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis for the small G-protein-effector interaction of Ras-related protein 1 (Rap1) and the adaptor protein Krev interaction trapped 1 (KRIT1)., Li X, Zhang R, Draheim KM, Liu W, Calderwood DA, Boggon TJ, J Biol Chem. 2012 May 10. PMID:22577140
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (4dxa.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 4DXA
  • CSU: Contacts of Structural Units for 4DXA
  • Structure Factors (473 Kb)
  • Retrieve 4DXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DXA from S2C, [Save to disk]
  • Re-refined 4dxa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DXA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DXA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dxa] [4dxa_A] [4dxa_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DXA: [B41] [RAS ] by SMART
  • Other resources with information on 4DXA
  • Community annotation for 4DXA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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