4DYM Crystal structure of the ACVR1 kinase domain in complex with the imidazo[1,2-b]pyridazine inhibitor K00135 date 2012-02-29
authors Chaikuad, A., Sanvitale, C., Cooper, C., Canning, P., Mahajan, P., Daga, N., Petrie, K., Alfano, I., Gileadi, O., Fedorov, O., Krojer, T., Filippakopoulos, P., Muniz, J.R.C., Delft, F.von., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.27922
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.42
ligand GOL, IYZ, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4dym.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 4DYM
  • CSU: Contacts of Structural Units for 4DYM
  • Structure Factors (192 Kb)
  • Retrieve 4DYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DYM from S2C, [Save to disk]
  • Re-refined 4dym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DYM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DYM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dym] [4dym_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DYM: [STYKc ] by SMART
  • Other resources with information on 4DYM
  • Community annotation for 4DYM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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