4DYY Crystal Structure of the Cu-adduct of Human H-Ferritin variant MIC1 date 2012-02-29
authors Tezcan, F.A., Huard, D.J.E.
compound source
symmetry
R_factor
R_Free 0.24072
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand CA, CU, EDO, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRe-engineering protein interfaces yields copper-inducible ferritin cage assembly., Huard DJ, Kane KM, Tezcan FA, Nat Chem Biol. 2013 Jan 20. doi: 10.1038/nchembio.1163. PMID:23340339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4dyy.pdb1.gz) 757 Kb
  • LPC: Ligand-Protein Contacts for 4DYY
  • CSU: Contacts of Structural Units for 4DYY
  • Structure Factors (1145 Kb)
  • Retrieve 4DYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DYY from S2C, [Save to disk]
  • Re-refined 4dyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DYY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DYY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dyy_A] [4dyy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DYY
  • Community annotation for 4DYY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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