4E1J Crystal structure of glycerol kinase in complex with glycerol from Sinorhizobium meliloti 1021 date
authors Agarwal, R., Chamala, S., Evans, B., Foti, R., Gizzi, A., Hillerich, B., Kar, A., Lafleur, J., Siedel, R., Villigas, G., Zencheck, W., Almo, S.C., Swaminathan, S., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.28993
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.33
ligand CL, GOL, MSE, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]
  • Biological Unit Coordinates (4e1j.pdb1.gz) 141 Kb
  • Biological Unit Coordinates (4e1j.pdb2.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4E1J
  • CSU: Contacts of Structural Units for 4E1J
  • Structure Factors (1246 Kb)
  • Retrieve 4E1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E1J from S2C, [Save to disk]
  • Re-refined 4e1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E1J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E1J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e1j_D] [4e1j_B] [4e1j_A] [4e1j] [4e1j_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E1J
  • Community annotation for 4E1J at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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