4E1T X-ray crystal structure of the transmembrane beta-domain from invasin from Yersinia pseudotuberculosis date 2012-03-07
authors Fairman, J.W., Dautin, N., Wojtowicz, D., Wei, L., Noinaj, N., Barnard, T.J., Udho, E., Finkelstein, A., Przytycka, T.M., Cherezov, V., Buchanan, S.K.
compound source
symmetry
R_factor
R_Free 0.2596
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.26
ligand OLB, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis., Fairman JW, Dautin N, Wojtowicz D, Liu W, Noinaj N, Barnard TJ, Udho E, Przytycka TM, Cherezov V, Buchanan SK, Structure. 2012 May 31. PMID:22658748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4e1t.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4E1T
  • CSU: Contacts of Structural Units for 4E1T
  • Structure Factors (177 Kb)
  • Retrieve 4E1T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E1T from S2C, [Save to disk]
  • Re-refined 4e1t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E1T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E1T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E1T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e1t_A] [4e1t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E1T
  • Community annotation for 4E1T at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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