4E6C p38a-perifosine Complex date
authors Livnah, O., Tzarum, N., Eisenberg-Domovich, Y.
compound source
symmetry
R_factor
R_Free 0.29184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.39
ligand 0O8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLipid Molecules Induce p38alpha Activation via a Novel Molecular Switch., Tzarum N, Eisenberg-Domovich Y, Gills JJ, Dennis PA, Livnah O, J Mol Biol. 2012 Oct 16. pii: S0022-2836(12)00816-9. doi:, 10.1016/j.jmb.2012.10.007. PMID:23079240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4e6c.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4E6C
  • CSU: Contacts of Structural Units for 4E6C
  • Structure Factors (217 Kb)
  • Retrieve 4E6C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E6C from S2C, [Save to disk]
  • Re-refined 4e6c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E6C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E6C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e6c] [4e6c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E6C: [S_TKc ] by SMART
  • Other resources with information on 4E6C
  • Community annotation for 4E6C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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