4EC0 Crystal structure of hH-PGDS with water displacing inhibitor date
authors Day, J.E., Thorarensen, A., Trujillo, J.I.
compound source
symmetry
R_factor
R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
ligand 7PQ, GSH, MG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInvestigation of the binding pocket of human hematopoietic prostaglandin (PG) D2 synthase (hH-PGDS): A tale of two waters., Trujillo JI, Kiefer JR, Huang W, Day JE, Moon J, Jerome GM, Bono CP, Kornmeier CM, Williams ML, Kuhn C, Rennie GR, Wynn TA, Carron CP, Thorarensen A, Bioorg Med Chem Lett. 2012 Jun 1;22(11):3795-9. Epub 2012 Apr 13. PMID:22546671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4ec0.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 4EC0
  • CSU: Contacts of Structural Units for 4EC0
  • Structure Factors (255 Kb)
  • Retrieve 4EC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EC0 from S2C, [Save to disk]
  • Re-refined 4ec0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EC0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EC0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ec0_B] [4ec0_A] [4ec0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EC0
  • Community annotation for 4EC0 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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