4EDY	Crystal structure of hH-PGDS with water displacing inhibitor	date	2012-03-27
authors	Day, J.E., Thorarensen, A., Trujillo, J.I., Kiefer, J.R.
compound		source
symmetry		R_factor R_Free 0.20437
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.72
ligand	9PQ, DMS, GSH, MG BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Investigation of the binding pocket of human hematopoietic prostaglandin (PG) D2 synthase (hH-PGDS): A tale of two waters., Trujillo JI, Kiefer JR, Huang W, Day JE, Moon J, Jerome GM, Bono CP, Kornmeier CM, Williams ML, Kuhn C, Rennie GR, Wynn TA, Carron CP, Thorarensen A, Bioorg Med Chem Lett. 2012 Jun 1;22(11):3795-9. Epub 2012 Apr 13. PMID:22546671

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk] Biological Unit Coordinates (4edy.pdb1.gz) 159 Kb LPC: Ligand-Protein Contacts for 4EDY CSU: Contacts of Structural Units for 4EDY Structure Factors (565 Kb) Retrieve 4EDY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4EDY from S2C, [Save to disk] Re-refined 4edy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4EDY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4EDY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4EDY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4edy] [4edy_B] [4edy_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4EDY

Community annotation for 4EDY at PDBWiki (http://pdbwiki.org)

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