4EFN Crystal structure of H-Ras Q61L in complex with GppNHp (state 1) date
authors Muraoka, S., Shima, F., Araki, M., Inoue, T., Yoshimoto, A., Ijiri, Y., Seki, N., Tamura, A., Kumasaka, T., Yamamoto, M., Kataoka, T.
compound source
symmetry
R_factor
R_Free 0.23694
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants., Muraoka S, Shima F, Araki M, Inoue T, Yoshimoto A, Ijiri Y, Seki N, Tamura A, Kumasaka T, Yamamoto M, Kataoka T, FEBS Lett. 2012 Jun 12;586(12):1715-8. Epub 2012 May 11. PMID:22584058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (4efn.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 4EFN
  • CSU: Contacts of Structural Units for 4EFN
  • Structure Factors (119 Kb)
  • Retrieve 4EFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EFN from S2C, [Save to disk]
  • Re-refined 4efn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EFN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4efn_A] [4efn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EFN: [RAS ] by SMART
    • Other resources with information on 4EFN
  • Community annotation for 4EFN at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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