4EG1 Trypanosoma brucei methionyl-tRNA synthetase in complex with substrate Methionine date
authors Koh, C.Y., Kim, J.E., Shibata, S., Fan, E., Verlinde, C.L.M.J., Hol, W.G.J.
compound source
symmetry
R_factor
R_Free 0.25393
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand CAS, GOL, MET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDistinct States of Methionyl-tRNA Synthetase Indicate Inhibitor Binding by Conformational Selection., Koh CY, Kim JE, Shibata S, Ranade RM, Yu M, Liu J, Gillespie JR, Buckner FS, Verlinde CL, Fan E, Hol WG, Structure. 2012 Aug 14. PMID:22902861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (4eg1.pdb1.gz) 175 Kb
  • Biological Unit Coordinates (4eg1.pdb2.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 4EG1
  • CSU: Contacts of Structural Units for 4EG1
  • Structure Factors (1000 Kb)
  • Retrieve 4EG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EG1 from S2C, [Save to disk]
  • Re-refined 4eg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EG1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EG1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s4eg1, region G:11-179 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eg1_B] [4eg1_A] [4eg1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EG1
  • Community annotation for 4EG1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science