4EGJ Crystal structure of D-alanine-D-alanine ligase from Burkholderia xenovorans date
authors SSGCID, SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2597
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
Gene BXENO ; BXE
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCombining functional and structural genomics to sample the essential Burkholderia structome., Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D 3rd, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC, PLoS One. 2013;8(1):e53851. doi: 10.1371/journal.pone.0053851. Epub 2013 Jan 31. PMID:23382856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • Biological Unit Coordinates (4egj.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (4egj.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (4egj.pdb3.gz) 86 Kb
  • Biological Unit Coordinates (4egj.pdb4.gz) 77 Kb
  • Biological Unit Coordinates (4egj.pdb5.gz) 172 Kb
  • Biological Unit Coordinates (4egj.pdb6.gz) 162 Kb
  • CSU: Contacts of Structural Units for 4EGJ
  • Structure Factors (885 Kb)
  • Retrieve 4EGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGJ from S2C, [Save to disk]
  • Re-refined 4egj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EGJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egj_A] [4egj_C] [4egj_B] [4egj] [4egj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EGJ
  • Community annotation for 4EGJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science