4EH2 Human p38 MAP kinase in complex with NP-F1 and RL87 date 2012-04-02
authors Over, B., Gruetter, C., Waldmann, H., Rauh, D.
compound source
symmetry
R_factor
R_Free 0.2737
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 0OK, IRG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNatural-product-derived fragments for fragment-based ligand discovery., Over B, Wetzel S, Grutter C, Nakai Y, Renner S, Rauh D, Waldmann H, Nat Chem. 2012 Dec 18;5(1):21-8. doi: 10.1038/nchem.1506. Epub 2012 Dec 2. PMID:23247173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4eh2.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4EH2
  • CSU: Contacts of Structural Units for 4EH2
  • Structure Factors (183 Kb)
  • Retrieve 4EH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EH2 from S2C, [Save to disk]
  • Re-refined 4eh2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EH2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EH2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s4eh2, region H:181-350 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eh2] [4eh2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EH2: [S_TKc ] by SMART
  • Other resources with information on 4EH2
  • Community annotation for 4EH2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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