4EHV Human p38 MAP kinase in complex with NP-F10 and RL87 date 2012-04-04
authors Over, B., Gruetter, C., Waldmann, H., Rauh, D.
compound source
symmetry
R_factor
R_Free 0.2516
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 0SJ, IRG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNatural-product-derived fragments for fragment-based ligand discovery., Over B, Wetzel S, Grutter C, Nakai Y, Renner S, Rauh D, Waldmann H, Nat Chem. 2012 Dec 18;5(1):21-8. doi: 10.1038/nchem.1506. Epub 2012 Dec 2. PMID:23247173
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (4ehv.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 4EHV
  • CSU: Contacts of Structural Units for 4EHV
  • Structure Factors (324 Kb)
  • Retrieve 4EHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EHV from S2C, [Save to disk]
  • Re-refined 4ehv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EHV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ehv] [4ehv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EHV: [S_TKc ] by SMART
    • Other resources with information on 4EHV
  • Community annotation for 4EHV at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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