4EIK Crystal Structure of the Human Fyn SH3 domain in complex with the synthetic peptide VSL12 date
authors Camara-Artigas, A.
compound source
symmetry
R_factor
R_Free 0.1954
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand NA enzyme
Primary referenceCrystallization of and selenomethionine phasing strategy for a SETMAR-DNA complex., Chen Q, Georgiadis M, Acta Crystallogr F Struct Biol Commun. 2016 Sep;72(Pt 9):713-9. doi:, 10.1107/S2053230X16012723. Epub 2016 Aug 26. PMID:27599863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (4eik.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 4EIK
  • CSU: Contacts of Structural Units for 4EIK
  • Structure Factors (239 Kb)
  • Retrieve 4EIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EIK from S2C, [Save to disk]
  • Re-refined 4eik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EIK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4eik_A] [4eik] [4eik_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EIK: [SH3 ] by SMART
  • Other resources with information on 4EIK
  • Community annotation for 4EIK at PDBWiki (http://pdbwiki.org)

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