4EMG Crystal structure of SpLsm3 date 2012-04-12
authors Jiang, S.M., Wu, D.H., Song, H.W.
compound source
symmetry
R_factor
R_Free 0.2770
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceCrystal Structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe., Wu D, Jiang S, Bowler MW, Song H, PLoS One. 2012;7(5):e36768. Epub 2012 May 17. PMID:22615807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (4emg.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4emg.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4EMG
  • CSU: Contacts of Structural Units for 4EMG
  • Structure Factors (704 Kb)
  • Retrieve 4EMG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EMG from S2C, [Save to disk]
  • Re-refined 4emg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EMG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EMG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EMG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4emg] [4emg_I] [4emg_K] [4emg_D] [4emg_H] [4emg_M] [4emg_F] [4emg_L] [4emg_N] [4emg_G] [4emg_E] [4emg_B] [4emg_A] [4emg_J] [4emg_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EMG: [Sm ] by SMART
    • Other resources with information on 4EMG
  • Community annotation for 4EMG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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