4ER7 Crystal Structure of human DOT1L in complex with inhibitor SGC0947 date
authors Wernimont, A.K., Tempel, W., Yu, W., Scopton, A., Li, Y., Nguyen, K.T., Vedadi, M., Bradner, J.E., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brown, P.J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2418
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand AW3, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalytic site remodelling of the DOT1L methyltransferase by selective inhibitors., Yu W, Chory EJ, Wernimont AK, Tempel W, Scopton A, Federation A, Marineau JJ, Qi J, Barsyte-Lovejoy D, Yi J, Marcellus R, Iacob RE, Engen JR, Griffin C, Aman A, Wienholds E, Li F, Pineda J, Estiu G, Shatseva T, Hajian T, Al-Awar R, Dick JE, Vedadi M, Brown PJ, Arrowsmith CH, Bradner JE, Schapira M, Nat Commun. 2012;3:1288. doi: 10.1038/ncomms2304. PMID:23250418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (4er7.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4ER7
  • CSU: Contacts of Structural Units for 4ER7
  • Structure Factors (514 Kb)
  • Retrieve 4ER7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ER7 from S2C, [Save to disk]
  • Re-refined 4er7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ER7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ER7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ER7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4er7] [4er7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ER7: [AT_hook ] by SMART
  • Other resources with information on 4ER7
  • Community annotation for 4ER7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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