4GP8 Structure of Recombinant Cytochrome ba3 Oxidase mutant Y133W+T231F from Thermus thermophilus date 2012-08-20
authors Li, Y., Chen, Y., Stout, C.D.
compound source
symmetry
R_factor
R_Free 0.22721
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CU, CUA, HAS, HEM, OLC, PER enzyme
note 4GP8 supersedes 4ESL
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


    • B
  • cytochrome-c oxidase activit...


    • C


    Primary referenceLigand Access to the Active Site in Thermus thermophilus ba3 and Bovine Heart aa3 Cytochrome Oxidases., McDonald WJ, Funatogawa C, Li Y, Szundi I, Chen Y, Fee JA, Stout CD, Einarsdottir O, Biochemistry. 2013 Jan 2. PMID:23282175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4gp8.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 4GP8
  • CSU: Contacts of Structural Units for 4GP8
  • Structure Factors (1038 Kb)
  • Retrieve 4GP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GP8 from S2C, [Save to disk]
  • Re-refined 4gp8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GP8 in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 4GP8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GP8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gp8] [4gp8_B] [4gp8_C] [4gp8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GP8
  • Community annotation for 4GP8 at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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