4F4L Open Channel Conformation of a Voltage Gated Sodium Channel date 2012-05-10
authors McCusker, E.C., Bagneris, C., Naylor, C.E., Cole, A.R., Avanzo, N.D., Nichols, C.G., Wallace, B.A.
compound source
symmetry
R_factor
R_Free 0.2852
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.49
Gene MMC1
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of a bacterial voltage-gated sodium channel pore reveals mechanisms of opening and closing., McCusker EC, Bagneris C, Naylor CE, Cole AR, D'Avanzo N, Nichols CG, Wallace BA, Nat Commun. 2012 Oct 2;3:1102. doi: 10.1038/ncomms2077. PMID:23033078
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (4f4l.pdb1.gz) 56 Kb
  • CSU: Contacts of Structural Units for 4F4L
  • Structure Factors (170 Kb)
  • Retrieve 4F4L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F4L from S2C, [Save to disk]
  • Re-refined 4f4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F4L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F4L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F4L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f4l_A] [4f4l] [4f4l_D] [4f4l_C] [4f4l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F4L
  • Community annotation for 4F4L at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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