4F56 The bicyclic intermediate structure provides insights into the desuccinylation mechanism of SIRT5 date
authors Zhou, Y., Hao, Q.
compound source
symmetry
R_factor
R_Free 0.2327
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand CGK, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Bicyclic Intermediate Structure Provides Insights into the Desuccinylation Mechanism of Human Sirtuin 5 (SIRT5)., Zhou Y, Zhang H, He B, Du J, Lin H, Cerione RA, Hao Q, J Biol Chem. 2012 Aug 17;287(34):28307-14. Epub 2012 Jul 5. PMID:22767592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (4f56.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (4f56.pdb2.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4F56
  • CSU: Contacts of Structural Units for 4F56
  • Structure Factors (1055 Kb)
  • Retrieve 4F56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F56 from S2C, [Save to disk]
  • Re-refined 4f56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F56
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F56, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f56] [4f56_A] [4f56_B] [4f56_D] [4f56_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F56
  • Community annotation for 4F56 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science