4F5B Triple mutant Src SH2 domain bound to phosphotyrosine date 2012-05-12
authors Kaneko, T., Huang, H., Cao, X., Li, C., Voss, C., Sidhu, S.S., Li, S.S.
compound source
symmetry
R_factor
R_Free 0.2303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.57
ligand PTR enzyme
Primary referenceSuperbinder SH2 Domains Act as Antagonists of Cell Signaling., Kaneko T, Huang H, Cao X, Li X, Li C, Voss C, Sidhu SS, Li SS, Sci Signal. 2012 Sep 25;5(243):ra68. PMID:23012655
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4f5b.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4F5B
  • CSU: Contacts of Structural Units for 4F5B
  • Structure Factors (786 Kb)
  • Retrieve 4F5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F5B from S2C, [Save to disk]
  • Re-refined 4f5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F5B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F5B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f5b] [4f5b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F5B: [SH2 ] by SMART
    • Other resources with information on 4F5B
  • Community annotation for 4F5B at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science