4F5G Rational Design and Directed Evolution of E. coli Apartate Aminotransferase to Tyrosine Aminotransferase: Mutant P2. date 2012-05-13
authors Addington, T.A., Fisher, A.J., Toney, M.D.
compound source
symmetry
R_factor
R_Free 0.1905
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.67
ligand LLP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceJanus: Prediction and Ranking of Mutations Required for Functional Interconversion of Enzymes., Addington TA, Mertz RW, Siegel JB, Thompson JM, Fisher AJ, Filkov V, Fleischman N, Suen A, Zhang C, Toney MD, J Mol Biol. 2013 Feb 6. pii: S0022-2836(13)00065-X. doi:, 10.1016/j.jmb.2013.01.034. PMID:23396064
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (4f5g.pdb1.gz) 276 Kb
  • LPC: Ligand-Protein Contacts for 4F5G
  • CSU: Contacts of Structural Units for 4F5G
  • Structure Factors (3649 Kb)
  • Retrieve 4F5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F5G from S2C, [Save to disk]
  • Re-refined 4f5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F5G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F5G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f5g_B] [4f5g_A] [4f5g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F5G
  • Community annotation for 4F5G at PDBWiki (http://pdbwiki.org)

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